DONATE

Publications

Access IBEC scientific production portal (IBEC CRIS), for more detailed information and advanced search features.

Find here the list of all IBEC's publications by year.

by Keyword: Circuits

Gomez-Valades, Alicia G, Meseguer, David, Varela, Luis, Lienhard, Gabriele, Fernandez, Uxia, Vidal-Itriago, Andres, Toledo, Miriam, Eyre, Elena, Laudo, Berta, Diaz-Castro, Francisco, Pozo, Macarena, Boutagouga Boudjadja, Mehdi, Fos-Domenech, Julia, Garcia-Ramon, Pau, Ferreira, Mariana, Altirriba, Jordi, Beiroa, Daniel, Chen, Bandy, Rodriguez-Diaz, Amanda, Mila-Guasch, Maria, Chivite, Inigo, Obri, Arnaud, Ramirez, Sara, Haddad-Tovolli, Roberta, Tahiri, Iasim, Gentry, Mathew S, D'Agostino, Giuseppe, Nogueiras, Ruben, Renier, Nicolas, Horvath, Tamas L, Guinovart, Joan J, Duran, Jordi, Schneeberger, Marc, Claret, Marc, (2026). Glycogen drives the sensory activation of POMC neurons Nature Metabolism

Hypothalamic POMC neurons modulate systemic energy balance and glucose homeostasis by sensing nutritional state signals. In addition to this classic regulatory mode, these neurons are also activated by the sensory perception of food. Here, we report that food-related sensory cues engage glycogen metabolism in POMC neurons. Genetic depletion of glycogen through various approaches renders POMC neurons unresponsive to food-associated sensory stimuli. This defective perception of food is linked to alterations in consummatory behaviour, hepatic adaptations and cephalic insulin release associated with a prediabetic phenotype that progresses into overweight and overt diabetes with a high-calorie diet or ageing. Collectively, our results posit glycogen as a decisive fuel resource for meeting the rapid and demanding energy requirements linked with sensory activation. Furthermore, our data delineate the biological function of food perception and provide support for the physiological relevance of neuronal glycogen.

JTD Keywords: Accumulation, Agrp neurons, Cephalic phase responses, Circuits, Gene, In-vivo, Memory, Mitochondrial dynamics, Plasticity, Reveals


Maleeva, Galyna, Matera, Carlo, Roda, Silvia, Colleoni, Alessio, De Amici, Marco, Gorostiza, Pau, (2025). Molecular Tools to Study and Control Dopaminergic Neurotransmission With Light MEDICINAL RESEARCH REVIEWS 45, 1407-1422

Dopaminergic neurotransmission is involved in several important brain functions, such as motor control, learning, reward-motivated behavior, and emotions. Dysfunctions of dopaminergic system may lead to the development of various neurological and psychiatric disorders, like Parkinson's disease, schizophrenia, depression, and addictions. Despite years of sustained research, it is not fully established how dopaminergic neurotransmission governs these important functions through a relatively small number of neurons that release dopamine. Light-driven neurotechnologies, based on the use of small light-regulated molecules or overexpression of light-regulated proteins in neurons, have greatly contributed to the advancement of our understanding of dopaminergic circuits and our ability to control them selectively. Here, we overview the current state-of-the-art of light-driven control of dopaminergic neurotransmission. While we provide a concise guideline for the readers interested in pharmacological, pharmacogenetic, and optogenetic approaches to modulate dopaminergic neurotransmission, our primary focus is on the usage of photocaged and photo-switchable small dopaminergic molecules. We argue that photopharmacology, photoswitchable molecules of varied modalities, can be employed in a wide range of experimental paradigms, providing unprecedent insights into the principles of dopaminergic control, and represent the most promising light-based therapeutic approach for spatiotemporally precise correction of dopamine-related neural functions and pathologies.

JTD Keywords: Activation, Azobenzene, Caged compounds, Caged ligands, Catecholamine, D1, D2, Dendritic spines, Dopamine, Mechanisms, Neuromodulation, Neuronal circuits, Optogenetics, Optopharmacology, Phasic dopamine, Photoisomerization, Photolysi, Photopharmacology, Photoswitc, Protein-coupled receptors, Release


Castagna, R, Kolarski, D, Durand-de Cuttoli, R, Maleeva, G, (2022). Orthogonal Control of Neuronal Circuits and Behavior Using Photopharmacology JOURNAL OF MOLECULAR NEUROSCIENCE 72, 1433-1442

Over the last decades, photopharmacology has gone far beyond its proof-of-concept stage to become a bona fide approach to study neural systems in vivo. Indeed, photopharmacological control has expanded over a wide range of endogenous targets, such as receptors, ion channels, transporters, kinases, lipids, and DNA transcription processes. In this review, we provide an overview of the recent progresses in the in vivo photopharmacological control of neuronal circuits and behavior. In particular, the use of small aquatic animals for the in vivo screening of photopharmacological compounds, the recent advances in optical modulation of complex behaviors in mice, and the development of adjacent techniques for light and drug delivery in vivo are described.

JTD Keywords: brain circuits, circadian rhythm, in vivo photomodulation, in vivo technology, neuronal receptors, Architecture, Azobenzene photoswitches, Brain circuits, Channels, Circadian rhythm, In vivo photomodulation, In vivo technology, Light, Modulator, Neuronal receptors, Optical control, Optogenetics, Pharmacology, Photopharmacology, Receptors, Systems


Aydin, O, Passaro, AP, Raman, R, Spellicy, SE, Weinberg, RP, Kamm, RD, Sample, M, Truskey, GA, Zartman, J, Dar, RD, Palacios, S, Wang, J, Tordoff, J, Montserrat, N, Bashir, R, Saif, MTA, Weiss, R, (2022). Principles for the design of multicellular engineered living systems APL BIOENGINEERING 6, 10903

Remarkable progress in bioengineering over the past two decades has enabled the formulation of fundamental design principles for a variety of medical and non-medical applications. These advancements have laid the foundation for building multicellular engineered living systems (M-CELS) from biological parts, forming functional modules integrated into living machines. These cognizant design principles for living systems encompass novel genetic circuit manipulation, self-assembly, cell–cell/matrix communication, and artificial tissues/organs enabled through systems biology, bioinformatics, computational biology, genetic engineering, and microfluidics. Here, we introduce design principles and a blueprint for forward production of robust and standardized M-CELS, which may undergo variable reiterations through the classic design-build-test-debug cycle. This Review provides practical and theoretical frameworks to forward-design, control, and optimize novel M-CELS. Potential applications include biopharmaceuticals, bioreactor factories, biofuels, environmental bioremediation, cellular computing, biohybrid digital technology, and experimental investigations into mechanisms of multicellular organisms normally hidden inside the “black box” of living cells.

JTD Keywords: cell-fate specification, endothelial-cells, escherichia-coli, extracellular-matrix, gene-expression noise, nuclear hormone-receptors, pluripotent stem-cells, primitive endoderm, transcription factors, Artificial tissues, Assembly cells, Biological parts, Biological systems, Bioremediation, Blood-brain-barrier, Cell engineering, Cell/matrix communication, Design principles, Environmental technology, Functional modules, Fundamental design, Genetic circuits, Genetic engineering, Living machines, Living systems, Medical applications, Molecular biology, Synthetic biology


Sans, J, Arnau, M, Sanz, V, Turon, P, Alemán, C, (2022). Polarized Hydroxyapatite: New Insights and Future Perspectives Through Systematic Electrical Characterization at the Interface Advanced Materials Interfaces 9, 2101631

Puigbò, J. Y., Maffei, G., Herreros, I., Ceresa, M., González Ballester, M. A., Verschure, P. F. M. J., (2018). Cholinergic behavior state-dependent mechanisms of neocortical gain control: A neurocomputational study Molecular Neurobiology 55, (1), 249-257

The embodied mammalian brain evolved to adapt to an only partially known and knowable world. The adaptive labeling of the world is critically dependent on the neocortex which in turn is modulated by a range of subcortical systems such as the thalamus, ventral striatum, and the amygdala. A particular case in point is the learning paradigm of classical conditioning where acquired representations of states of the world such as sounds and visual features are associated with predefined discrete behavioral responses such as eye blinks and freezing. Learning progresses in a very specific order, where the animal first identifies the features of the task that are predictive of a motivational state and then forms the association of the current sensory state with a particular action and shapes this action to the specific contingency. This adaptive feature selection has both attentional and memory components, i.e., a behaviorally relevant state must be detected while its representation must be stabilized to allow its interfacing to output systems. Here, we present a computational model of the neocortical systems that underlie this feature detection process and its state-dependent modulation mediated by the amygdala and its downstream target the nucleus basalis of Meynert. In particular, we analyze the role of different populations of inhibitory interneurons in the regulation of cortical activity and their state-dependent gating of sensory signals. In our model, we show that the neuromodulator acetylcholine (ACh), which is in turn under control of the amygdala, plays a distinct role in the dynamics of each population and their associated gating function serving the detection of novel sensory features not captured in the state of the network, facilitating the adjustment of cortical sensory representations and regulating the switching between modes of attention and learning.

JTD Keywords: Acetylcholine, Inhibitory network, Neocortical circuits, Neuromodulation


Punter-Villagrasa, J., Colomer-Farrarons, J., Miribel-Catala, P., Puig-Vidal, M., Samitier, J., (2011). Discrete to full custom ASIC solutions for bioelectronic applications Proceedings of the SPIE - The International Society for Optical Engineering VLSI Circuits and Systems V , SPIE - The International Society for Optical Engineering (Prague, Czech Republic) 8067, 80670Q

This paper presents a first approach on multi-pathogen detection system for portable point-of-care applications on discrete electronics field. The main interest is focused on the development of custom built electronic solutions for bioelectronics applications, from discrete devices to ASICS solutions.

JTD Keywords: Application specific integrated circuits, Biomedical electronics, Biosensors


Colomer-Farrarons, J., Miribel-Catala, P. L., Samitier, J., Arundell, M., Rodriguez, I., (2009). Design of a miniaturized electrochemical instrument for in-situ O/sub 2/ monitoring Sensors and Signal Conditioning VLSI Circuits and Systems IV , SPIE (Desdren, Germany) 7363, 73630A

The authors are working toward the design of a device for the detection of oxygen, following a discrete and an integrated instrumentation implementation. The discrete electronics are also used for preliminary analysis, to confirm the validity of the conception of system, and its set-up would be used in the characterization of the integrated device, waiting for the chip fabrication. This paper presents the design of a small and portable potentiostat integrated with electrodes, which is cheap and miniaturized, which can be applied for on-site measurements for the simultaneous detection of O/sub 2/ and temperature in water systems. As a first approach a discrete PCB has been designed based on commercial discrete electronics and specific oxygen sensors. Dissolved oxygen concentration (DO) is an important index of water quality and the ability to measure the oxygen concentration and temperature at different positions and depths would be an important attribute to environmental analysis. Especially, the objective is that the sensor and the electronics can be integrated in a single encapsulated device able to be submerged in environmental water systems and be able to make multiple measurements. For our proposed application a small and portable device is developed, where electronics and sensors are miniaturized and placed in close proximity to each other. This system would be based on the sensors and electronics, forming one module, and connected to a portable notebook to save and analyze the measurements on-line. The key electronics is defined by the potentiostat amplifier, used to fix the voltage between the working (WE) and reference (RE) electrodes following an input voltage (Vin). Vin is a triangular signal, programmed by a LabView/sup c / interface, which is also used to represent the CV transfers. To obtain a smaller and compact solution the potentiostat amplifier has also been integrated defining a full custom ASIC amplifier, which is in progress, looking for a point-of-care device. These circuits have been designed with a 0.13 mu m technology from ST Microelectronics through the CMP-TIMA service.

JTD Keywords: Amplifiers, Application specific integrated circuits, Chemical sensors, Electrodes, Portable instruments, Temperature measurement, Water sources