by Keyword: Joint symbolic dynamic
Garde, Ainara, Voss, Andreas, Caminal, Pere, Benito, Salvador, Giraldo, Beatriz F., (2013). SVM-based feature selection to optimize sensitivity-specificity balance applied to weaning Computers in Biology and Medicine , 43, (5), 533-540
Classification algorithms with unbalanced datasets tend to produce high predictive accuracy over the majority class, but poor predictive accuracy over the minority class. This problem is very common in biomedical data mining. This paper introduces a Support Vector Machine (SVM)-based optimized feature selection method, to select the most relevant features and maintain an accurate and well-balanced sensitivity–specificity result between unbalanced groups. A new metric called the balance index (B) is defined to implement this optimization. The balance index measures the difference between the misclassified data within each class. The proposed optimized feature selection is applied to the classification of patients' weaning trials from mechanical ventilation: patients with successful trials who were able to maintain spontaneous breathing after 48 h and patients who failed to maintain spontaneous breathing and were reconnected to mechanical ventilation after 30 min. Patients are characterized through cardiac and respiratory signals, applying joint symbolic dynamic (JSD) analysis to cardiac interbeat and breath durations. First, the most suitable parameters (C+,C−,σ) are selected to define the appropriate SVM. Then, the feature selection process is carried out with this SVM, to maintain B lower than 40%. The best result is obtained using 6 features with an accuracy of 80%, a B of 18.64%, a sensitivity of 74.36% and a specificity of 82.42%.
JTD Keywords: Support vector machines, Balance index, Sensitivity-specificity balance, Cardiorespiratory interaction, Joint symbolic dynamics, Feature selection, Weaning procedure
Caminal, P., Giraldo, B. F., Vallverdu, M., Benito, S., Schroeder, R., Voss, A., (2010). Symbolic dynamic analysis of relations between cardiac and breathing cycles in patients on weaning trials Annals of Biomedical Engineering , 38, (8), 2542-52
Traditional time-domain techniques of data analysis are often not sufficient to characterize the complex dynamics of the cardiorespiratory interdependencies during the weaning trials. In this paper, the interactions between the heart rate (HR) and the breathing rate (BR) were studied using joint symbolic dynamic analysis. A total of 133 patients on weaning trials from mechanical ventilation were analyzed: 94 patients with successful weaning (group S) and 39 patients that failed to maintain spontaneous breathing (group F). The word distribution matrix enabled a coarse-grained quantitative assessment of short-term nonlinear analysis of the cardiorespiratory interactions. The histogram of the occurrence probability of the cardiorespiratory words presented a higher homogeneity in group F than in group S, measured with a higher number of forbidden words in group S as well as a higher number of words whose probability of occurrence is higher than a probability threshold in group S. The discriminant analysis revealed the best results when applying symbolic dynamic variables. Therefore, we hypothesize that joint symbolic dynamic analysis provides enhanced information about different interactions between HR and BR, when comparing patients with successful weaning and patients that failed to maintain spontaneous breathing in the weaning procedure.
JTD Keywords: Dynamical nonlinearities analysis, Cardiorespiratory interdependencies, Joint symbolic dynamic, Weaning procedure
Garde, A., Schroeder, R., Voss, A., Caminal, P., Benito, S., Giraldo, B., (2010). Patients on weaning trials classified with support vector machines Physiological Measurement , 31, (7), 979-993
The process of discontinuing mechanical ventilation is called weaning and is one of the most challenging problems in intensive care. An unnecessary delay in the discontinuation process and an early weaning trial are undesirable. This study aims to characterize the respiratory pattern through features that permit the identification of patients' conditions in weaning trials. Three groups of patients have been considered: 94 patients with successful weaning trials, who could maintain spontaneous breathing after 48 h ( GSucc ); 39 patients who failed the weaning trial ( GFail ) and 21 patients who had successful weaning trials, but required reintubation in less than 48 h ( GRein ). Patients are characterized by their cardiorespiratory interactions, which are described by joint symbolic dynamics (JSD) applied to the cardiac interbeat and breath durations. The most discriminating features in the classification of the different groups of patients ( GSucc , GFail and GRein ) are identified by support vector machines (SVMs). The SVM-based feature selection algorithm has an accuracy of 81% in classifying GSucc versus the rest of the patients, 83% in classifying GRein versus GSucc patients and 81% in classifying GRein versus the rest of the patients. Moreover, a good balance between sensitivity and specificity is achieved in all classifications.
JTD Keywords: Mechanical ventilation, Weaning, Support vector machines, Joint symbolic dynamics