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Nanoscale bioelectrical characterization

ABOUT

The main goal of the Nanoscale Bioelectrical Characterization group is to develop a multiscale and multimodal (electrical, mechanical) approach to Bioelectricity, covering from the nano- to the microscale. To this end the group combines methods and techniques from Scanning Probe Microscopy, Artificial Intelligence and Organic Bioelectronics. The main objective is to contribute to develop new label-free characterization tools for Life Sciences, new nanomedical diagnosis approaches and new electronic biosensors.

Autonomous multimodal scanning probe microscopes for Life Sciences 

At present the group focuses in the development of an Autonomous Multimodal Functional Scanning Probe Microscope assisted by Artificial Intelligence for Life Sciences and Medical applications. The objective is to map the structural, electrical and mechanical properties at the nanoscale of cells, bacteria, drug nanocarriers and organic Bioelectronic devices with minimal intervention of the operator and at high throughput.  

The objective is to obtain in an autonomous way fast functional electric and mechanical nanoscale maps of Life Science samples and Organic Electronics devices in physiological conditions with minimal intervention of the operator and at high throughput. 

Initial results obtained by the group include the upgrade of the Scanning Dielectric Microscope to enable its operation in physiological buffers for living cell imaging, the development of a supervised machine learning algorithm to process Scanning Dielectric Microscopy data and provide almost instantaneously local dielectric constant maps of both eukaryotic and prokaryotic cells, and the implementation of a workflow for Scanning Dielectric Microscopy for high throughput and automatic nanoscale multimodal (electrical and mechanical) characterization. 

High throughput multimodal characterization of drug nanocarriers  

The development of novel drug nanocarriers require an exhaustive multiparametric characterization, which includes its morphology and structure, net charge, particle size distribution or phase transition temperature. These characteristics are obtained usually from different techniques. We target to obtain simultaneously and at high throughput multiparametric information on drug nanocarriers by using a single instrument, namely, the autonomous multimodal in liquid Scanning Dielectric Microscope. We aim at obtaining information on the size, sphericity, membrane wall thickness, lamellarity, Young’s modulus, stiffness, surface charge and membrane specific capacitance of drug nanocarriers, such as liposomes, polymeric nanoparticles or lipid nanoparticles. 

Interrelation of mechanical and electrical processes in living neurons 

Mechanical and electrical processes in cells and tissues can sometimes appear interrelated, as for instance, in the action potential propagation in neurons, which provokes the electrical polarization of the cell membrane and, at the same time, a change in neuron’s membrane tension. Similarly, the restructuring of the cytoskeleton of neurons, as occurring in the Alzheimer disease, can induce a change in cellular stiffness and, consequently, an improper neuron firing. We aim at investigating this interrelation by means of the multimodal in liquid Scanning Dielectric Microscope applied to living neurons. 

Unravelling the electrical conduction properties of cable bacteria 

Long-range electron conduction in cable bacteria filaments presents unusual characteristics in the biological world, exceeding by more than 6 orders of magnitude the conductivity of the best conducting protein nanowires. Electric conduction takes place through Niquel rich protein nanofibers located in the bacteria periplasm, but still many aspects of the electronic conduction in cable bacteria remain unknown. We aim at providing new insights on the conducting properties of cable bacteria by using the unique capabilities and versatility of the Scanning Dielectric Microscope. 

Novel nanoscale physical phenotyping of cancer cells 

The whole process of cancer aggression, from local growth to extravasation into blood vessels, migration, seeding into different organs and formation of metastases involves physical changes (mechanical and electrical) and their interplay with protein expression and genetic transformations. We aim at developing a high throughput nanoscale multimodal physical phenotyping method for cancer cells based on the Scanning Dielectric Microscope. Our ling term objective is to provide additional diagnostics tools to medical doctors for evaluating cancer progression and aggression. 

Structure-function relationships for materials in Organic Bioelectronics 

Organic semiconductor materials have emerged as key materials in the development of platforms (e.g. electrolyte gated transistors) for transducing and amplifying biological and biochemical signals. This fact makes them an integral part of diverse biosensing and bioelectronic devices able to sense even single molecules or to record bioelectric potentials from excitable cells. The fundamental understanding of the nanoscale electronic and ionic transport governing the operation of these materials and devices remains, however, poorly understood. We aim at providing new insights into the structure-function relationship of organic materials used in Bioelectronics with the unique capabilities of the multimodal in operando in-liquid Scanning Dielectric Microscope. 

Top: In operando in-liquid Scanning Dielectric Microscope for multimodal (structural, mechanical and electrical) nanoscale characterization of samples in electrolyte solutions. Bottom (from left to right): Topography, electric force and Young’s modulus nanoscale images of a neurite from a living neuron in physiological buffer obtained with the multimodal Scanning Dielectric Microscope. 
Left: Dielectric constant map of fixed HeLa cells obtained by processing and analysing experimental data obtained with the Scanning Dielectric Microscope in dry air environment. Total processing time was three months. Centre: 10% of the dielectric constant map used to train a neural network to quantify the Scanning Dielectric Microscopy experimental data. Right: Output of the trained neural network when applied to the Scanning Dielectric Microscopy experimental data. Computation time: three seconds. The accuracy of the Neural Network prediction is above 90%. 
Left: Topographic image of cable bacteria filament with an isolated electrically conducting protein nanofiber. Centre and Right: Topographic and Electric force image of the portion of the nanofiber highlighted on the left image obtained with the Scanning Dielectric Microscope in dry air environment. From these images one can determine the electrical conductivity of the protein nanofiber without the need to attach any microelectrode or touching physically the nanofiber. 

STAFF

Staff members:

Gabriel Gomila Lluch

Group Leader
+34 934 020 206
ggomilaibecbarcelona.eu

Former members:

Harishankar Balakrishnan | PhD Student 
Now: Post-doc, University of Munich (Germany) 
Ignacio Casuso | PhD Student 
Now: Staff Scientist, INSERM (France) 
Maria Chiara Biagi | PhD Student 
Now: In-vivo Image Analysis Scientist, AstraZenca (Spain) 
Marti Checa | PhD Student 
Now: R&D Staff scientist, Oak Ridge National Laboratory (USA) 
Martin Edwards | Postdoc 
Now: Assistant Professor, University of Arkansas (USA) 
Daniel Esteban Ferrer | PhD Student 
Now: CEO, ViR S.L. (Spain) 
Laura Fumagalli | Senior Researcher 
Now: Reader, University of Manchester (UK) 
Georg Gramse | PhD Student 
Now: Group Leader, Johannes Kepler University of Linz (Austria) 
Larisa Huetter | PhD Student 
Now: IT consultant, Rewion (Germany) 
Adrica Kyndiah | Postdoc 
Now: Senior Scientist, Instituto Italiano di Tecnologia (Italy) 
Helena Lozano | PhD Student 
Now: Project Manager, CSIC (Spain) 
Martina di Muzzio | PhD Student 
Now: Engineer PMQ, Roche (Spain) 
Jordi Otero | Postdoc 
Now: Lecturer, Universitat de Barcelona (Spain) 
Shubham Tanwar | PhD Student 
Now: Post-doc, Italian Institute of Technology (Italy) 
Romen Trujillo | PhD Student 
Now: Associate Professor, Universitat de Barcelona (Spain) 
Marc Van der Hofstadt | PhD Student 
Now: Post-doc, CNRS (France) 

PROJECTS

INTERNATIONAL PROJECTSFINANCERPI
PRINGLE · Protein Based Next Generation Electronics (2022-2026)European Commission, PathFinder OpenGabriel Gomila

NATIONAL PROJECTSFINANCERPI
ICREA Academia Award (2023-2027)
Catalan Institution for Research and Advanced Studies (ICREA) / Generalitat de CatalunyaGabriel Gomila
FINISHED PROJECTSFINANCERPI
SGR Grups de recerca consolidats (2017-2020)AGAUR / SGRGabriel Gomila
SPM2.0 · Scanning probe microscopies for nanoscale fast, tomographic and composition imaging (2017-2020)Marie Curie Skłodowska European Training Network (MSCA-ITN-ETN)Gabriel Gomila (Project Coordinator)
NANOMICROWAVE · Microwave Nanotechnology for Semiconductor and Life Sciences (2013-2016)MARIE CURIE – ITNGabriel Gomila
V-SMMART Nano · Volumetric Scanning Microwave Microscopy Analytical and Research Tool for Nanotechnology (2012-2016)NMP – SMEGabriel Gomila
AFM4NanoMed&Bio · European network on applications of Atomic Force Microscopy to Nanomedicine and Life SciencesEU COST Action TD1002Gabriel Gomila (Management Committee Substitute Member)
BIOWIRESENSE · Plataforma universal para la detección de biomarcadores basada en nanocables bacterianos conductores (2017-2019)MINECO, Explora CienciaGabriel Gomila
NANOELECTOMOGRAPHY· Electrical nanotomography based on scanning probe microscopy for nanomaterials and biological samples (2014-2016)MINECO (TEC2013-48344-C2-1-P)Gabriel Gomila
NANOELECTROPHYS · Scanning Electric Force Microscope for Electrophysological Recordings at the Nanoscale
(2016-2019)
MINECO (TEC2016-79156-P)
Gabriel Gomila
ICREA Academia Award (2015-2019)Catalan Institution for Research and Advanced Studies (ICREA) / Generalitat de CatalunyaGabriel Gomila
BORGES · Biosensing with ORGanic ElectronicS (2019-2022)Marie Curie Skłodowska European Training Network (MSCA-ITN-ETN)Gabriel Gomila
BIGDATASPM ·  Métodos de datos masivos aplicados a la Microscopía de Sonda de Barrido para estudios eléctricos funcionales en ciencias de la vida (2020-2023)MINECO,  Generación Conocimiento: Proyectos I+DGabriel Gomila

PUBLICATIONS

EQUIPMENT

  • Cypher Atomic Force Microscope (Asylum Research)
  • Nanowizard 4 Bio-Atomic Force Microscope (JPK)
  • Cervantes Atomic Force Microscope (Nanotec Electronica)
  • Easy Scan 2 Atomic Force Microscope (Nanosurf)
  • AxioImager A1m Reflection Optical Microscope (Zeiss) equipped with a AxioCam ERc5s (Zeiss)
  • CompactStat portable electrochemical interface and impedance analyzer (Ivium Technologies)
  • Palmsens 4, 8 channel Potentiostat (Palmens)
  • 2 eLockIn204 4-phase Lock-In amplifiers (Anfatec)
  • Keithley 6430 sub-femtoAmp remote sourcemeter
  • Keysight B2912A precision Source/Measure Unit, 2 channels
  • Keysight N9310A RF Signal Generator 9 kHz to 3.0 GHz
  • Computation Workstation Intel Xeon, NVIDIA RTXA5000 

COLLABORATIONS

  • Dr. Filip Meysman 
    University of Antwerp, Belgium 
  • Dra. Adrica Kyndiah 
    Italian Institute of Technology, Italy 
  • Dr. Martí Checa 
    Oak Ridge National Laboratory, USA 
  • Dr. Jordi Borrell 
    University of Barcelona, Spain 
  • Dra. Marta Mas-Torrents 
    Institut de Ciències de Materials de Barcelona, Spain 
  • Dr. Eduard Torrents 
    Institut de Bioenginyeria de Catalunya, Spain  
  • Dr. Jose Antonio del Rio 
    Institut de Bioenginyeria de Catalunya, Spain  

NEWS

Researchers from across Europe gathered for the kick-off meeting of the SPM4.0 project, an innovative Marie Curie Skłodowska Doctoral Network (MSCA-DN) dedicated to advancing the capabilities of autonomous Scanning Probe … Read more

IBEC hosts the EU Project SPM4.0 kick-off meeting

Researchers from across Europe gathered for the kick-off meeting of the SPM4.0 project, an innovative Marie Curie Skłodowska Doctoral Network (MSCA-DN) dedicated to advancing the capabilities of autonomous Scanning Probe … Read more

The 1st Translational Collaboration Day between the Vall d’Hebron Institute of Research (VHIR) and the Institute of Bioengineering of Catalonia (IBEC), held on 21st November, was an opportunity to learn about the projects and research lines of both institutions and to promote interaction between professionals.

IBEC and VHIR hold a collaboration day to promote synergies

The 1st Translational Collaboration Day between the Vall d’Hebron Institute of Research (VHIR) and the Institute of Bioengineering of Catalonia (IBEC), held on 21st November, was an opportunity to learn about the projects and research lines of both institutions and to promote interaction between professionals.

IBEC and the Blood and Tissue Bank of Catalonia (BST) held a day to explore new collaborations in bioengineering and translational medicine. The meeting, held yesterday at IBEC, highlighted innovative projects, presented a joint PhD programme and strengthened the link between biomedical research and clinical applications.

IBEC and BST strengthen ties with Translational Collaboration Day

IBEC and the Blood and Tissue Bank of Catalonia (BST) held a day to explore new collaborations in bioengineering and translational medicine. The meeting, held yesterday at IBEC, highlighted innovative projects, presented a joint PhD programme and strengthened the link between biomedical research and clinical applications.

IBEC’s 17th Annual Symposium focused on ‘Bioengineering for Emergent and Advanced Therapies’, one of IBEC’s key application areas. Around 300 people attended the event, including local and international researchers. It was a multidisciplinary environment in which experts from other centres and the IBEC community itself had the opportunity to present their projects and share knowledge.

Bioengineering for Emergent and Advanced Therapies at the 17th IBEC Symposium

IBEC’s 17th Annual Symposium focused on ‘Bioengineering for Emergent and Advanced Therapies’, one of IBEC’s key application areas. Around 300 people attended the event, including local and international researchers. It was a multidisciplinary environment in which experts from other centres and the IBEC community itself had the opportunity to present their projects and share knowledge.

IBEC will coordinate SPM4.0 and participate as a partner in ENTRY-DM, two of the projects selected in the 2023 call for PhD networks within the Marie Skłodowska-Curie Actions (MSCA). Thanks to these two projects, IBEC will add three new PhD students to its staff.

Two projects with IBEC participation selected in the MSCA call for PhD networks

IBEC will coordinate SPM4.0 and participate as a partner in ENTRY-DM, two of the projects selected in the 2023 call for PhD networks within the Marie Skłodowska-Curie Actions (MSCA). Thanks to these two projects, IBEC will add three new PhD students to its staff.

A study led by IBEC has successfully mapped the local electrical potential along the structure of organic transistors used in bioelectronics, enabling a detailed assessment of bottlenecks in charge transport. The goal of this study is to deepen the understanding of the properties of charge transport in materials used in organic electronics when in contact with liquid media, aiming to enhance their applications in biosensors or bioelectrical recordings.

New Methodology for Studying Organic Transistors in Operation with Applications in Bioelectronics

A study led by IBEC has successfully mapped the local electrical potential along the structure of organic transistors used in bioelectronics, enabling a detailed assessment of bottlenecks in charge transport. The goal of this study is to deepen the understanding of the properties of charge transport in materials used in organic electronics when in contact with liquid media, aiming to enhance their applications in biosensors or bioelectrical recordings.

IBEC researchers Elisabeth Engel and Gabriel Gomila have been awarded the “ICREA Acadèmia” distinction by the Catalan Institution for Research and Advanced Studies (ICREA). Engel and Gomila, who lead their … Read more

Elisabeth Engel and Gabriel Gomila receive the ICREA Acadèmia grant

IBEC researchers Elisabeth Engel and Gabriel Gomila have been awarded the “ICREA Acadèmia” distinction by the Catalan Institution for Research and Advanced Studies (ICREA). Engel and Gomila, who lead their … Read more

Introduction to the vacant position: The Nanobioelec Group/Unit is looking for Research Assistant. The contract will be within the framework of the European Project PRINGLE, whose objective is to develop … Read more

Research Assistant at the Nanoscale bioelectrical characterization group

Introduction to the vacant position: The Nanobioelec Group/Unit is looking for Research Assistant. The contract will be within the framework of the European Project PRINGLE, whose objective is to develop … Read more

An international study co-authored by IBEC’s researchers has identified nickel as a key conductive component in the wires found in cable bacteria. This ground-breaking finding, obtained by combining high-resolution microscopy, spectroscopy and chemical imaging, has been published in the prestigious journal Nature Communications.

Researchers uncover the reason for “Living wires” extraordinary electrical properties

An international study co-authored by IBEC’s researchers has identified nickel as a key conductive component in the wires found in cable bacteria. This ground-breaking finding, obtained by combining high-resolution microscopy, spectroscopy and chemical imaging, has been published in the prestigious journal Nature Communications.

IBEC researchers were able to drastically reduce the microscopy images processing time using machine learning tools. By using this new technique, they obtained, in only few seconds, a map of the cellular biochemical composition.

Machine learning applied to microscopy accelerates image processing

IBEC researchers were able to drastically reduce the microscopy images processing time using machine learning tools. By using this new technique, they obtained, in only few seconds, a map of the cellular biochemical composition.

JOBS